IL_3J77_113

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_113 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.2067

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J77|1|2S|C|758
3J77|1|2S|U|759
3J77|1|2S|G|760
3J77|1|2S|A|761
3J77|1|2S|U|762
3J77|1|2S|G|763
*
3J77|1|2S|C|768
3J77|1|2S|G|769
3J77|1|2S|G|770
3J77|1|2S|A|771
3J77|1|2S|U|772
3J77|1|2S|G|773

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 63

60S ribosomal protein L13

Chain 78

60S ribosomal protein L28

Chain 92

60S ribosomal protein L42