IL_3J77_116

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

3J77|1|2S|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_116 not in the Motif Atlas

Homologous match to IL_8C3A_032

Geometric discrepancy: 0.1653

The information below is about IL_8C3A_032

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

3J77|1|2S|G|833
3J77|1|2S|U|834
*
3J77|1|2S|G|859
3J77|1|2S|G|860
3J77|1|2S|C|861

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 69

60S ribosomal protein L19

Chain 93

60S ribosomal protein L43

Chain L2

60S ribosomal protein L2