IL_3J77_130

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_130 not in the Motif Atlas

Homologous match to IL_8P9A_271

Geometric discrepancy: 0.4121

The information below is about IL_8P9A_271

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11415.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

3J77|1|2S|U|1014
3J77|1|2S|U|1015
3J77|1|2S|C|1016
3J77|1|2S|C|1017
3J77|1|2S|G|1018
*
3J77|1|2S|U|1034
3J77|1|2S|G|1035
3J77|1|2S|A|1036

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 60

60S ribosomal protein L10

Chain 61

60S ribosomal protein L11

Chain L5

60S ribosomal protein L5