IL_3J77_163
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- GGAA*UC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J77_163 not in the Motif Atlas
- Homologous match to IL_8C3A_082
- Geometric discrepancy: 0.2496
- The information below is about IL_8C3A_082
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
3J77|1|2S|G|1898
3J77|1|2S|G|1899
3J77|1|2S|A|1900
3J77|1|2S|A|1901
*
3J77|1|2S|U|2336
3J77|1|2S|C|2337
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 73
- 60S ribosomal protein L23
- Chain L3
- 60S ribosomal protein L3
Coloring options: