IL_3J77_178

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

3J77|1|2S|A|2397, 3J77|1|2S|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_178 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.2055

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J77|1|2S|G|2396
3J77|1|2S|A|2397
3J77|1|2S|A|2398
*
3J77|1|2S|U|2981
3J77|1|2S|A|2982
3J77|1|2S|C|2983
3J77|1|2S|C|2984

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 67

60S ribosomal protein L17

Chain L3

60S ribosomal protein L3