IL_3J77_179

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

3J77|1|2S|U|2410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_179 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.2004

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3J77|1|2S|G|2409
3J77|1|2S|U|2410
3J77|1|2S|U|2411
*
3J77|1|2S|A|2811
3J77|1|2S|C|2812

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 78

60S ribosomal protein L28

Chain L4

60S ribosomal protein L4