IL_3J77_197

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

3J77|1|2S|G|2945, 3J77|1|2S|A|2946

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_197 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1616

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

3J77|1|2S|C|2879
3J77|1|2S|U|2880
3J77|1|2S|C|2881
*
3J77|1|2S|G|2943
3J77|1|2S|U|2944
3J77|1|2S|G|2945
3J77|1|2S|A|2946
3J77|1|2S|G|2947

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 73

60S ribosomal protein L23

Chain L3

60S ribosomal protein L3