IL_3J77_201

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GAU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_201 not in the Motif Atlas

Geometric match to IL_5TBW_112

Geometric discrepancy: 0.1899

The information below is about IL_5TBW_112

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J77|1|2S|G|2918
3J77|1|2S|A|2919
3J77|1|2S|U|2920
*
3J77|1|2S|A|2926
3J77|1|2S|C|2927
3J77|1|2S|C|2928

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 73

60S ribosomal protein L23

Chain L3

60S ribosomal protein L3