3D structure

PDB id
3J77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
GUUAAAA*UC
Length
9 nucleotides
Bulged bases
3J77|1|1S|A|619
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J77_241 not in the Motif Atlas
Homologous match to IL_8P9A_405
Geometric discrepancy: 0.1927
The information below is about IL_8P9A_405
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.6
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
4

Unit IDs

3J77|1|1S|G|616
3J77|1|1S|U|617
3J77|1|1S|U|618
3J77|1|1S|A|619
3J77|1|1S|A|620
3J77|1|1S|A|621
3J77|1|1S|A|622
*
3J77|1|1S|U|1104
3J77|1|1S|C|1105

Current chains

Chain 1S
18S ribosomal RNA

Nearby chains

Chain 23
40S ribosomal protein S23
Chain 26
40S ribosomal protein S26
Chain S2
40S ribosomal protein S2

Coloring options:


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