IL_3J77_241

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

3J77|1|1S|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_241 not in the Motif Atlas

Homologous match to IL_8P9A_405

Geometric discrepancy: 0.1927

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

3J77|1|1S|G|616
3J77|1|1S|U|617
3J77|1|1S|U|618
3J77|1|1S|A|619
3J77|1|1S|A|620
3J77|1|1S|A|621
3J77|1|1S|A|622
*
3J77|1|1S|U|1104
3J77|1|1S|C|1105

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 23

40S ribosomal protein S23

Chain 26

40S ribosomal protein S26

Chain S2

40S ribosomal protein S2