IL_3J77_251

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

3J77|1|1S|C|1431, 3J77|1|1S|U|1432, 3J77|1|1S|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J77_251 not in the Motif Atlas

Homologous match to IL_8P9A_440

Geometric discrepancy: 0.208

The information below is about IL_8P9A_440

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

3J77|1|1S|U|1276
3J77|1|1S|G|1277
3J77|1|1S|G|1278
*
3J77|1|1S|U|1430
3J77|1|1S|C|1431
3J77|1|1S|U|1432
3J77|1|1S|G|1433
3J77|1|1S|U|1434
3J77|1|1S|G|1435
3J77|1|1S|A|1436

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 10

40S ribosomal protein S10

Chain 20

40S ribosomal protein S20

Chain 29

40S ribosomal protein S29

Chain S3

40S ribosomal protein S3