IL_3J78_024

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

3J78|1|1S|U|440

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_024 not in the Motif Atlas

Geometric match to IL_5J7L_279

Geometric discrepancy: 0.3269

The information below is about IL_5J7L_279

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

3J78|1|1S|U|439
3J78|1|1S|U|440
3J78|1|1S|A|441
*
3J78|1|1S|U|463
3J78|1|1S|A|464

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 24

40S ribosomal protein S24

Chain S4

40S ribosomal protein S4