IL_3J78_031

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

3J78|1|1S|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_031 not in the Motif Atlas

Geometric match to IL_5TBW_053

Geometric discrepancy: 0.3169

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3J78|1|1S|G|557
3J78|1|1S|U|558
3J78|1|1S|C|559
*
3J78|1|1S|G|586
3J78|1|1S|C|587

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 30

40S ribosomal protein S30

Chain S3

40S ribosomal protein S3