IL_3J78_043

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

3J78|1|1S|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_043 not in the Motif Atlas

Geometric match to IL_1RPU_001

Geometric discrepancy: 0.1722

The information below is about IL_1RPU_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J78|1|1S|G|867
3J78|1|1S|G|868
3J78|1|1S|A|869
*
3J78|1|1S|U|958
3J78|1|1S|U|959
3J78|1|1S|U|960
3J78|1|1S|U|961

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 13

40S ribosomal protein S13

Chain 22

40S ribosomal protein S22

Chain 27

40S ribosomal protein S27