IL_3J78_055

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

3J78|1|1S|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_055 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.303

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

3J78|1|1S|G|1149
3J78|1|1S|G|1150
3J78|1|1S|A|1151
*
3J78|1|1S|U|1627
3J78|1|1S|U|1628

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 26

40S ribosomal protein S26

Chain MR

messenger RNA