IL_3J78_088

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_088 not in the Motif Atlas

Geometric match to IL_4UYK_002

Geometric discrepancy: 0.2821

The information below is about IL_4UYK_002

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_06586.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

3J78|1|2S|U|3
3J78|1|2S|U|4
3J78|1|2S|G|5
*
3J78|1|8S|C|154
3J78|1|8S|A|155

Current chains

Chain 2S

25S ribosomal RNA

Chain 8S

5.8S ribosomal RNA

Nearby chains

Chain 75

60S ribosomal protein L25

Chain L8

60S ribosomal protein L8