IL_3J78_090
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AAAUCAG*CUGUUU
- Length
- 13 nucleotides
- Bulged bases
- 3J78|1|2S|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_090 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.342
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J78|1|2S|A|11
3J78|1|2S|A|12
3J78|1|2S|A|13
3J78|1|2S|U|14
3J78|1|2S|C|15
3J78|1|2S|A|16
3J78|1|2S|G|17
*
3J78|1|8S|C|142
3J78|1|8S|U|143
3J78|1|8S|G|144
3J78|1|8S|U|145
3J78|1|8S|U|146
3J78|1|8S|U|147
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 65
- 60S ribosomal protein L15
- Chain 75
- 60S ribosomal protein L25
- Chain 85
- 60S ribosomal protein L35
- Chain L8
- 60S ribosomal protein L8
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