IL_3J78_098

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GUUC*GAGUGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J78|1|2S|G|176
3J78|1|2S|U|177
3J78|1|2S|U|178
3J78|1|2S|C|179
*
3J78|1|2S|G|237
3J78|1|2S|A|238
3J78|1|2S|G|239
3J78|1|2S|U|240
3J78|1|2S|G|241
3J78|1|2S|C|242

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 63

60S ribosomal protein L13

Chain 85

60S ribosomal protein L35

Chain 87

60S ribosomal protein L37

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA