IL_3J78_100

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

3J78|1|2S|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_100 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.2545

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

3J78|1|2S|G|337
3J78|1|2S|A|338
3J78|1|2S|C|339
*
3J78|1|8S|G|25
3J78|1|8S|U|26

Current chains

Chain 2S

25S ribosomal RNA

Chain 8S

5.8S ribosomal RNA

Nearby chains

Chain 76

60S ribosomal protein L26

Chain L4

60S ribosomal protein L4