IL_3J78_106
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 3J78|1|2S|A|519, 3J78|1|2S|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_106 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.2113
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J78|1|2S|G|517
3J78|1|2S|G|518
3J78|1|2S|A|519
3J78|1|2S|U|520
3J78|1|2S|A|521
3J78|1|2S|A|522
3J78|1|2S|A|523
3J78|1|2S|U|524
3J78|1|2S|C|525
*
3J78|1|2S|G|567
3J78|1|2S|G|568
3J78|1|2S|A|569
3J78|1|2S|A|570
3J78|1|2S|U|571
3J78|1|2S|A|572
3J78|1|2S|C|573
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 64
- 60S ribosomal protein L14
- Chain 70
- 60S ribosomal protein L20
- Chain L4
- 60S ribosomal protein L4
- Chain L7
- 60S ribosomal protein L7
Coloring options: