IL_3J78_111

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

3J78|1|2S|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_111 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.1446

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

3J78|1|2S|C|752
3J78|1|2S|C|753
*
3J78|1|2S|G|779
3J78|1|2S|A|780
3J78|1|2S|G|781

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 68

60S ribosomal protein L18

Chain 78

60S ribosomal protein L28

Chain 79

60S ribosomal protein L29