IL_3J78_114
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CCG*CUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_114 not in the Motif Atlas
- Geometric match to IL_4KNQ_004
- Geometric discrepancy: 0.167
- The information below is about IL_4KNQ_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
3J78|1|2S|C|803
3J78|1|2S|C|804
3J78|1|2S|G|805
*
3J78|1|2S|C|938
3J78|1|2S|U|939
3J78|1|2S|G|940
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 78
- 60S ribosomal protein L28
- Chain L4
- 60S ribosomal protein L4
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