IL_3J78_119

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

3J78|1|2S|U|874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_119 not in the Motif Atlas

Homologous match to IL_8C3A_035

Geometric discrepancy: 0.2563

The information below is about IL_8C3A_035

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3J78|1|2S|C|873
3J78|1|2S|U|874
3J78|1|2S|G|875
*
3J78|1|2S|C|886
3J78|1|2S|G|887

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain L3

60S ribosomal protein L3