IL_3J78_129

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_129 not in the Motif Atlas

Homologous match to IL_8C3A_045

Geometric discrepancy: 0.1529

The information below is about IL_8C3A_045

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J78|1|2S|A|1009
3J78|1|2S|G|1010
3J78|1|2S|A|1011
*
3J78|1|2S|U|1039
3J78|1|2S|A|1040
3J78|1|2S|U|1041

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 5S

5S ribosomal RNA; 5S rRNA

Chain 60

60S ribosomal protein L10

Chain L5

60S ribosomal protein L5