IL_3J78_132

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UUAC*GAA

Length

7 nucleotides

Bulged bases

3J78|1|2S|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_132 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.2816

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J78|1|2S|U|1073
3J78|1|2S|U|1074
3J78|1|2S|A|1075
3J78|1|2S|C|1076
*
3J78|1|2S|G|1083
3J78|1|2S|A|1084
3J78|1|2S|A|1085

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 71

60S ribosomal protein L21

Chain 79

60S ribosomal protein L29

Chain L5

60S ribosomal protein L5