IL_3J78_136
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 3J78|1|2S|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_136 not in the Motif Atlas
- Geometric match to IL_4WF9_038
- Geometric discrepancy: 0.2197
- The information below is about IL_4WF9_038
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
3J78|1|2S|A|1180
3J78|1|2S|U|1181
3J78|1|2S|A|1182
*
3J78|1|2S|U|1324
3J78|1|2S|U|1325
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 64
- 60S ribosomal protein L14
- Chain 66
- 60S ribosomal protein L16
- Chain 70
- 60S ribosomal protein L20
- Chain 83
- 60S ribosomal protein L33
- Chain L7
- 60S ribosomal protein L7
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