IL_3J78_145
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 3J78|1|2S|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J78_145 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1921
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
3J78|1|2S|U|1388
3J78|1|2S|G|1389
3J78|1|2S|A|1390
3J78|1|2S|C|1391
3J78|1|2S|G|1392
3J78|1|2S|A|1393
3J78|1|2S|A|1394
3J78|1|2S|G|1395
*
3J78|1|2S|U|1415
3J78|1|2S|C|1416
3J78|1|2S|G|1417
3J78|1|2S|A|1418
3J78|1|2S|A|1419
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 67
- 60S ribosomal protein L17
- Chain 76
- 60S ribosomal protein L26
- Chain 82
- 60S ribosomal protein L32
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4
- Chain L6
- 60S ribosomal protein L6
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