IL_3J78_163

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_163 not in the Motif Atlas

Homologous match to IL_8C3A_082

Geometric discrepancy: 0.186

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

3J78|1|2S|G|1898
3J78|1|2S|G|1899
3J78|1|2S|A|1900
3J78|1|2S|A|1901
*
3J78|1|2S|U|2336
3J78|1|2S|C|2337

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 73

60S ribosomal protein L23

Chain L3

60S ribosomal protein L3