IL_3J78_177

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

3J78|1|2S|A|2397, 3J78|1|2S|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_177 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.2373

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

3J78|1|2S|G|2396
3J78|1|2S|A|2397
3J78|1|2S|A|2398
*
3J78|1|2S|U|2981
3J78|1|2S|A|2982
3J78|1|2S|C|2983
3J78|1|2S|C|2984

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 67

60S ribosomal protein L17

Chain L3

60S ribosomal protein L3