IL_3J78_246

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

3J78|1|2S|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J78_246 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.1676

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

3J78|1|2S|G|1898
3J78|1|2S|G|1899
3J78|1|2S|A|1900
3J78|1|2S|A|1901
3J78|1|2S|G|1902
3J78|1|2S|U|1903
3J78|1|2S|C|1904
3J78|1|2S|G|1905
3J78|1|2S|G|1906
*
3J78|1|2S|C|2333
3J78|1|2S|U|2334
3J78|1|2S|G|2335
3J78|1|2S|U|2336
3J78|1|2S|C|2337

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 73

60S ribosomal protein L23

Chain L3

60S ribosomal protein L3