Loop IL_3J78

3D structure

PDB id: 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.3 Å

Loop

Sequence: CAUAGAGGGUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUACCUUUAUAG
Length: 54 nucleotides
Bulged bases: 3J78|1|2S|U|2453, 3J78|1|2S|U|2460, 3J78|1|2S|A|2500
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3J78|1|2S|C|2444
3J78|1|2S|A|2445
3J78|1|2S|U|2446
3J78|1|2S|A|2447
3J78|1|2S|G|2448
3J78|1|2S|A|2449
3J78|1|2S|G|2450
3J78|1|2S|G|2451
3J78|1|2S|G|2452
3J78|1|2S|U|2453
3J78|1|2S|G|2454
3J78|1|2S|U|2455
3J78|1|2S|A|2456
3J78|1|2S|G|2457
3J78|1|2S|A|2458
3J78|1|2S|A|2459
3J78|1|2S|U|2460
3J78|1|2S|A|2461
3J78|1|2S|A|2462
3J78|1|2S|G|2463
3J78|1|2S|U|2464
3J78|1|2S|G|2465
3J78|1|2S|G|2466
3J78|1|2S|G|2467
3J78|1|2S|A|2468
3J78|1|2S|G|2469
*
3J78|1|2S|C|2476
3J78|1|2S|G|2477
3J78|1|2S|C|2478
3J78|1|2S|C|2479
3J78|1|2S|A|2480
3J78|1|2S|G|2481
3J78|1|2S|U|2482
3J78|1|2S|G|2483
3J78|1|2S|A|2484
3J78|1|2S|A|2485
3J78|1|2S|A|2486
3J78|1|2S|U|2487
3J78|1|2S|A|2488
3J78|1|2S|C|2489
3J78|1|2S|C|2490
3J78|1|2S|A|2491
3J78|1|2S|C|2492
3J78|1|2S|U|2493
3J78|1|2S|A|2494
3J78|1|2S|C|2495
3J78|1|2S|C|2496
3J78|1|2S|U|2497
3J78|1|2S|U|2498
3J78|1|2S|U|2499
3J78|1|2S|A|2500
3J78|1|2S|U|2501
3J78|1|2S|A|2502
3J78|1|2S|G|2503

Current chains

Chain 2S: 25S ribosomal RNA

Nearby chains

Chain 86: 60S ribosomal protein L36
Chain ET: Transfer RNA; tRNA
Chain L1: 60S ribosomal protein L1
Chain S1: 40S ribosomal protein S1

IL_3J78_248