IL_3J79_005
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUAAU*AAUUGUC
- Length
- 14 nucleotides
- Bulged bases
- 3J79|1|A|U|120, 3J79|1|A|U|121, 3J79|1|A|U|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70273.1
- Basepair signature
- cWW-L-tHS-cWW-R-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J79|1|A|G|118
3J79|1|A|G|119
3J79|1|A|U|120
3J79|1|A|U|121
3J79|1|A|A|122
3J79|1|A|A|123
3J79|1|A|U|124
*
3J79|1|A|A|153
3J79|1|A|A|154
3J79|1|A|U|155
3J79|1|A|U|156
3J79|1|A|G|157
3J79|1|A|U|158
3J79|1|A|C|159
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 3
- 60S ribosomal protein uL29
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain J
- 60S ribosomal protein eL8
- Chain P
- 60S ribosomal protein eL15
Coloring options: