IL_3J79_019

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUCA*UUCUUCAA

Length

13 nucleotides

Bulged bases

3J79|1|A|U|530, 3J79|1|A|U|620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37702.1

Basepair signature

cWW-L-R-R-cWS-cSW-R-cWW

Number of instances in this motif group

1

Unit IDs

3J79|1|A|U|529
3J79|1|A|U|530
3J79|1|A|U|531
3J79|1|A|C|532
3J79|1|A|A|533
*
3J79|1|A|U|619
3J79|1|A|U|620
3J79|1|A|C|621
3J79|1|A|U|622
3J79|1|A|U|623
3J79|1|A|C|624
3J79|1|A|A|625
3J79|1|A|A|626

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 5

60S ribosomal protein uL30

Chain F

60S ribosomal protein uL4

Chain N

60S ribosomal protein eL14

Chain U

60S ribosomal protein eL20