IL_3J79_019
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUCA*UUCUUCAA
- Length
- 13 nucleotides
- Bulged bases
- 3J79|1|A|U|530, 3J79|1|A|U|620
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37702.1
- Basepair signature
- cWW-L-R-R-cWS-cSW-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J79|1|A|U|529
3J79|1|A|U|530
3J79|1|A|U|531
3J79|1|A|C|532
3J79|1|A|A|533
*
3J79|1|A|U|619
3J79|1|A|U|620
3J79|1|A|C|621
3J79|1|A|U|622
3J79|1|A|U|623
3J79|1|A|C|624
3J79|1|A|A|625
3J79|1|A|A|626
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein uL30
- Chain F
- 60S ribosomal protein uL4
- Chain N
- 60S ribosomal protein eL14
- Chain U
- 60S ribosomal protein eL20
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