IL_3J79_029

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGAG*CUAUUAGC

Length

13 nucleotides

Bulged bases

3J79|1|A|A|1052, 3J79|1|A|G|1056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28684.1

Basepair signature

cWW-R-tHW-tHW-tWW-cWW

Number of instances in this motif group

12

Unit IDs

3J79|1|A|G|924
3J79|1|A|A|925
3J79|1|A|G|926
3J79|1|A|A|927
3J79|1|A|G|928
*
3J79|1|A|C|1050
3J79|1|A|U|1051
3J79|1|A|A|1052
3J79|1|A|U|1053
3J79|1|A|U|1054
3J79|1|A|A|1055
3J79|1|A|G|1056
3J79|1|A|C|1057

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein uL4

Chain L

60S ribosomal protein eL13

Chain O

60S ribosomal protein uL15

Chain P

60S ribosomal protein eL15

Chain c

60S ribosomal protein eL37