IL_3J79_037
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAUUAAUAU*AAAAUA
- Length
- 16 nucleotides
- Bulged bases
- 3J79|1|A|A|1100, 3J79|1|A|A|1229, 3J79|1|A|U|1232
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_23045.1
- Basepair signature
- cWW-L-R-R-L-L-L-L-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J79|1|A|U|1095
3J79|1|A|G|1096
3J79|1|A|A|1097
3J79|1|A|U|1098
3J79|1|A|U|1099
3J79|1|A|A|1100
3J79|1|A|A|1101
3J79|1|A|U|1102
3J79|1|A|A|1103
3J79|1|A|U|1104
*
3J79|1|A|A|1228
3J79|1|A|A|1229
3J79|1|A|A|1230
3J79|1|A|A|1231
3J79|1|A|U|1232
3J79|1|A|A|1233
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 4
- 60S ribosomal protein eL29
- Chain 5
- 60S ribosomal protein uL30
- Chain S
- 60S ribosomal protein eL18
- Chain V
- 60S ribosomal protein eL21
Coloring options: