IL_3J79_039
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAGGUAG*CCAAUAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56233.1
- Basepair signature
- cWW-cWW-L-R-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
3J79|1|A|C|1113
3J79|1|A|A|1114
3J79|1|A|G|1115
3J79|1|A|G|1116
3J79|1|A|U|1117
3J79|1|A|A|1118
3J79|1|A|G|1119
*
3J79|1|A|C|1175
3J79|1|A|C|1176
3J79|1|A|A|1177
3J79|1|A|A|1178
3J79|1|A|U|1179
3J79|1|A|A|1180
3J79|1|A|G|1181
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 4
- 60S ribosomal protein eL29
- Chain 5
- 60S ribosomal protein uL30
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- 60S ribosomal protein uL16
- Chain R
- 60S ribosomal protein uL18
- Chain U
- 60S ribosomal protein eL20
- Chain V
- 60S ribosomal protein eL21
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