IL_3J79_039

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGGUAG*CCAAUAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56233.1

Basepair signature

cWW-cWW-L-R-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

3J79|1|A|C|1113
3J79|1|A|A|1114
3J79|1|A|G|1115
3J79|1|A|G|1116
3J79|1|A|U|1117
3J79|1|A|A|1118
3J79|1|A|G|1119
*
3J79|1|A|C|1175
3J79|1|A|C|1176
3J79|1|A|A|1177
3J79|1|A|A|1178
3J79|1|A|U|1179
3J79|1|A|A|1180
3J79|1|A|G|1181

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 4

60S ribosomal protein eL29

Chain 5

60S ribosomal protein uL30

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

60S ribosomal protein uL16

Chain R

60S ribosomal protein uL18

Chain U

60S ribosomal protein eL20

Chain V

60S ribosomal protein eL21