IL_3J79_041

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAAU*AAAC

Length

10 nucleotides

Bulged bases

3J79|1|A|U|1123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42675.1

Basepair signature

cWW-tWH-cSH-L-cWS-cWW

Number of instances in this motif group

38

Unit IDs

3J79|1|A|G|1121
3J79|1|A|A|1122
3J79|1|A|U|1123
3J79|1|A|A|1124
3J79|1|A|A|1125
3J79|1|A|U|1126
*
3J79|1|A|A|1169
3J79|1|A|A|1170
3J79|1|A|A|1171
3J79|1|A|C|1172

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

60S ribosomal protein uL16

Chain R

60S ribosomal protein uL18

Chain V

60S ribosomal protein eL21