IL_3J79_047

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J79_047 not in the Motif Atlas

Homologous match to IL_5TBW_046

Geometric discrepancy: 0.1293

The information below is about IL_5TBW_046

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

3J79|1|A|A|1248
3J79|1|A|U|1249
3J79|1|A|U|1250
*
3J79|1|A|A|1264
3J79|1|A|C|1265
3J79|1|A|U|1266

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 4

60S ribosomal protein eL29

Chain 5

60S ribosomal protein uL30

Chain B

5S ribosomal RNA; 5S rRNA

Chain V

60S ribosomal protein eL21