IL_3J79_048
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUAAG*CGAUAC
- Length
- 12 nucleotides
- Bulged bases
- 3J79|1|A|U|1459
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73029.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 12
Unit IDs
3J79|1|A|G|1294
3J79|1|A|A|1295
3J79|1|A|U|1296
3J79|1|A|A|1297
3J79|1|A|A|1298
3J79|1|A|G|1299
*
3J79|1|A|C|1456
3J79|1|A|G|1457
3J79|1|A|A|1458
3J79|1|A|U|1459
3J79|1|A|A|1460
3J79|1|A|C|1461
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein uL30
- Chain 8
- 60S ribosomal protein eL32
- Chain 9
- 60S ribosomal protein eL33
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain S
- 60S ribosomal protein eL18
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