IL_3J79_049
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGCCUAAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J79_049 not in the Motif Atlas
- Geometric match to IL_7RQB_037
- Geometric discrepancy: 0.1272
- The information below is about IL_7RQB_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_15861.7
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
3J79|1|A|U|1301
3J79|1|A|G|1302
3J79|1|A|C|1303
3J79|1|A|C|1304
3J79|1|A|U|1305
3J79|1|A|A|1306
3J79|1|A|A|1307
3J79|1|A|A|1308
*
3J79|1|A|U|1453
3J79|1|A|A|1454
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein uL30
- Chain 9
- 60S ribosomal protein eL33
- Chain K
- 60S ribosomal protein uL13
- Chain U
- 60S ribosomal protein eL20
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