IL_3J79_051
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUCAUGAG*CUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 3J79|1|A|U|1319, 3J79|1|A|G|1320, 3J79|1|A|A|1444, 3J79|1|A|A|1446
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19883.1
- Basepair signature
- cWW-tWW-L-tWW-tWH-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J79|1|A|C|1315
3J79|1|A|U|1316
3J79|1|A|C|1317
3J79|1|A|A|1318
3J79|1|A|U|1319
3J79|1|A|G|1320
3J79|1|A|A|1321
3J79|1|A|G|1322
*
3J79|1|A|C|1442
3J79|1|A|U|1443
3J79|1|A|A|1444
3J79|1|A|A|1445
3J79|1|A|A|1446
3J79|1|A|G|1447
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein uL6
- Chain K
- 60S ribosomal protein uL13
- Chain N
- 60S ribosomal protein eL14
- Chain U
- 60S ribosomal protein eL20
- Chain f
- 60S ribosomal protein eL40
Coloring options: