IL_3J79_052
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUCCCAUAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 3J79|1|A|U|1324, 3J79|1|A|A|1430
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15108.1
- Basepair signature
- cWW-cWW-L-R-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J79|1|A|G|1322
3J79|1|A|A|1323
3J79|1|A|U|1324
3J79|1|A|C|1325
3J79|1|A|C|1326
3J79|1|A|C|1327
3J79|1|A|A|1328
3J79|1|A|U|1329
3J79|1|A|A|1330
3J79|1|A|A|1331
3J79|1|A|A|1332
3J79|1|A|A|1333
*
3J79|1|A|U|1427
3J79|1|A|G|1428
3J79|1|A|A|1429
3J79|1|A|A|1430
3J79|1|A|A|1431
3J79|1|A|A|1432
3J79|1|A|U|1433
3J79|1|A|G|1434
3J79|1|A|G|1435
3J79|1|A|A|1436
3J79|1|A|U|1437
3J79|1|A|G|1438
3J79|1|A|G|1439
3J79|1|A|C|1440
3J79|1|A|G|1441
3J79|1|A|C|1442
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein uL30
- Chain 9
- 60S ribosomal protein eL33
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain E
- 60S ribosomal protein uL3
- Chain K
- 60S ribosomal protein uL13
- Chain Q
- 60S ribosomal protein uL16
- Chain f
- 60S ribosomal protein eL40
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