IL_3J79_054

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGA*UUAGAAUC

Length

13 nucleotides

Bulged bases

3J79|1|A|A|1503, 3J79|1|A|U|1505

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J79|1|A|G|1475
3J79|1|A|A|1476
3J79|1|A|A|1479
3J79|1|A|G|1480
3J79|1|A|A|1481
*
3J79|1|A|U|1499
3J79|1|A|U|1500
3J79|1|A|A|1501
3J79|1|A|G|1502
3J79|1|A|A|1503
3J79|1|A|A|1504
3J79|1|A|U|1505
3J79|1|A|C|1506

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein eL28

Chain 8

60S ribosomal protein eL32

Chain F

60S ribosomal protein uL4

Chain I

60S ribosomal protein eL6

Chain S

60S ribosomal protein eL18