IL_3J79_061
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAG*CAAAAG
- Length
- 11 nucleotides
- Bulged bases
- 3J79|1|A|A|1731, 3J79|1|A|A|1732
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_95526.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
3J79|1|A|C|1681
3J79|1|A|U|1682
3J79|1|A|A|1683
3J79|1|A|A|1684
3J79|1|A|G|1685
*
3J79|1|A|C|1728
3J79|1|A|A|1729
3J79|1|A|A|1730
3J79|1|A|A|1731
3J79|1|A|A|1732
3J79|1|A|G|1733
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein uL2
- Chain a
- 60S ribosomal protein eL34
- Chain c
- 60S ribosomal protein eL37
- Chain e
- 60S ribosomal protein eL39
Coloring options: