IL_3J79_062

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAUAG*CUUGUAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56067.1

Basepair signature

cWW-L-tWH-R-R-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3J79|1|A|A|1759
3J79|1|A|A|1760
3J79|1|A|U|1761
3J79|1|A|A|1762
3J79|1|A|G|1763
*
3J79|1|A|C|2089
3J79|1|A|U|2090
3J79|1|A|U|2091
3J79|1|A|G|2092
3J79|1|A|U|2093
3J79|1|A|A|2094
3J79|1|A|U|2095

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain Y

60S ribosomal protein uL23

Chain a

60S ribosomal protein eL34