IL_3J79_070

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGAAUC*GGAGAAG

Length

14 nucleotides

Bulged bases

3J79|1|A|U|1873, 3J79|1|A|A|1886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17283.1

Basepair signature

cWW-tSH-tSH-tHS-tSS-L-R-cWW

Number of instances in this motif group

6

Unit IDs

3J79|1|A|U|1868
3J79|1|A|G|1869
3J79|1|A|G|1870
3J79|1|A|A|1871
3J79|1|A|A|1872
3J79|1|A|U|1873
3J79|1|A|C|1874
*
3J79|1|A|G|1884
3J79|1|A|G|1885
3J79|1|A|A|1886
3J79|1|A|G|1887
3J79|1|A|A|1888
3J79|1|A|A|1889
3J79|1|A|G|1890

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 1

60S ribosomal protein eL27

Chain 6

60S ribosomal protein eL30

Chain T

60S ribosomal protein eL19

Chain a

60S ribosomal protein eL34

Chain h

60S ribosomal protein eL43