IL_3J79_087

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

3J79|1|A|A|2574, 3J79|1|A|C|2580, 3J79|1|A|C|2599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62969.1

Basepair signature

cWW-L-R-cHW-L-L-L-L-L-cWW

Number of instances in this motif group

9

Unit IDs

3J79|1|A|C|2570
3J79|1|A|C|2571
3J79|1|A|A|2572
3J79|1|A|A|2573
3J79|1|A|A|2574
3J79|1|A|U|2575
3J79|1|A|G|2576
3J79|1|A|C|2577
3J79|1|A|C|2578
3J79|1|A|U|2579
3J79|1|A|C|2580
3J79|1|A|G|2581
*
3J79|1|A|C|2597
3J79|1|A|G|2598
3J79|1|A|C|2599
3J79|1|A|G|2600

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein eL41