IL_3J79_094

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAUAG*CAAUA

Length

12 nucleotides

Bulged bases

3J79|1|A|U|2831, 3J79|1|A|U|2833, 3J79|1|A|A|2834, 3J79|1|A|U|2925

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68857.1

Basepair signature

cWW-L-R-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3J79|1|A|U|2829
3J79|1|A|U|2830
3J79|1|A|U|2831
3J79|1|A|A|2832
3J79|1|A|U|2833
3J79|1|A|A|2834
3J79|1|A|G|2835
*
3J79|1|A|C|2918
3J79|1|A|A|2919
3J79|1|A|A|2920
3J79|1|A|U|2925
3J79|1|A|A|2926

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein uL2

Chain J

60S ribosomal protein eL8