IL_3J79_095

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J79_095 not in the Motif Atlas

Homologous match to IL_5TBW_098

Geometric discrepancy: 0.121

The information below is about IL_5TBW_098

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

3J79|1|A|G|2953
3J79|1|A|A|2954
*
3J79|1|A|U|2964
3J79|1|A|A|2965
3J79|1|A|C|2966

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 4

60S ribosomal protein eL29

Chain V

60S ribosomal protein eL21

Chain i

60S ribosomal protein eL44