IL_3J79_098
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAAAUGACG*CUACUGUG
- Length
- 18 nucleotides
- Bulged bases
- 3J79|1|A|A|3116, 3J79|1|A|C|3123
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68922.1
- Basepair signature
- cWW-L-R-R-R-R-R-L-L-L-L-tWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J79|1|A|C|3115
3J79|1|A|A|3116
3J79|1|A|A|3117
3J79|1|A|A|3118
3J79|1|A|A|3119
3J79|1|A|U|3120
3J79|1|A|G|3121
3J79|1|A|A|3122
3J79|1|A|C|3123
3J79|1|A|G|3124
*
3J79|1|A|C|3136
3J79|1|A|U|3137
3J79|1|A|A|3138
3J79|1|A|C|3139
3J79|1|A|U|3140
3J79|1|A|G|3141
3J79|1|A|U|3142
3J79|1|A|G|3143
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein eL13
- Chain O
- 60S ribosomal protein uL15
- Chain b
- 60S ribosomal protein eL36
- Chain i
- 60S ribosomal protein eL44
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