3D structure

PDB id
3J79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UUGGUAC*GGAUUA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_72532.1
Basepair signature
cWW-cWW-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
2

Unit IDs

3J79|1|A|U|3405
3J79|1|A|U|3406
3J79|1|A|G|3407
3J79|1|A|G|3408
3J79|1|A|U|3409
3J79|1|A|A|3410
3J79|1|A|C|3411
*
3J79|1|A|G|3416
3J79|1|A|G|3417
3J79|1|A|A|3418
3J79|1|A|U|3419
3J79|1|A|U|3420
3J79|1|A|A|3421

Current chains

Chain A
28S ribosomal RNA

Nearby chains

Chain H
60S ribosomal protein uL6
Chain M
60S ribosomal protein uL14
Chain f
60S ribosomal protein eL40

Coloring options:

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