IL_3J79_113

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUGGUAC*GGAUUA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_72532.1

Basepair signature

cWW-cWW-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

3J79|1|A|U|3405
3J79|1|A|U|3406
3J79|1|A|G|3407
3J79|1|A|G|3408
3J79|1|A|U|3409
3J79|1|A|A|3410
3J79|1|A|C|3411
*
3J79|1|A|G|3416
3J79|1|A|G|3417
3J79|1|A|A|3418
3J79|1|A|U|3419
3J79|1|A|U|3420
3J79|1|A|A|3421

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein uL6

Chain M

60S ribosomal protein uL14

Chain f

60S ribosomal protein eL40